Index

A

add_Gaussian_noise() (in module density2graph)

C

calc_bc() (in module graph2class) calc_graph_features() (in module graph2class) calc_shortest_pthlen() (in module graph2class)

calc_similarity_score() (in module graph2class) classify_graphs() (in module graph2class) cluster_data() (in module density2graph) create_and_save_graph() (in module density2graph)

D

density2graph module

G

get_cluster_centroids() (in module density2graph) get_hydrophobicity() (in module pdb2graph)

graph2class module

L

load_density_file() (in module density2graph)

M

main() (in module density2graph) (in module pdb2graph) module density2graph graph2class pdb2graph

N

normalize_and_threshold_data() (in module density2graph)

P

pdb2graph module PDB_df_to_G() (in module pdb2graph) PDB_to_df() (in module pdb2graph)

plot_clustering_results() (in module density2graph) plot_coordinates() (in module pdb2graph) plot_FA_and_CA_coordinates() (in module pdb2graph) process_graphs() (in module graph2class) process_similarity_df() (in module graph2class)

S

save_data() (in module pdb2graph)

save_data_at_this_folder() (in module pdb2graph) similarity_measure() (in module graph2class)